# Benchmark 3 v2: Quast results analysis

## Agathis_dammara

* 3 mis and 2 local : due to wrong sequence of some links and misassembled single-copy region


## Carpodetus_serratus

* 1 local mis in the sequence of a link


## Lamprocapnos_spectabilis

* 3 local mis in the sequences of the links


## Lathyrus_pubescens

* 1 local mis in the sequence of a link


## Pelargonium_nanum

* Misassembly due to wrong links in SC,
* Local mis in a sequence of a link in an IR,
* Inversion of a link sequence in IR


## Triosteum_pinnatifidum

* One local mis in DR (contig 11)
    * Quast doesn’t align contig 11 twice. But to respect what Quast aligned, we must pass thought 11 twice (see graph in Gephi).
* Second local mis in the sequence of a link between IR and SC