Benchmark 5¶

All shell command blocks begin at the folder root: benchmark_5

Description¶

benchmark_5 solve the $IRP$ problem on artificial growing data with extra multiplicities and links.

Be sure you have Python3.9.

Create python virtual environment:

./config/install_venv39.sh

Activate the environment:

source .venv_39/bin/activate

Always make sure the environment is activated!

(.venv_39) # command lines may be prefix by the environment name

Source the environment:

source .venv_39/bin/activate

Run the benchmark:

python3.9 scripts/run_benchmark_5.py  # [-h] see help

This script generates a unique directory name $run_uid under the main run directory run, e.g. run/2023-03-08_13:17:34.

In this directory you will find:

mdcg_sizes.tsv gives the stats on the multiplied doubled contig graph
logs directory that contains all the solver’s log files
- solver_<solver_name>_<ampli>_<iter>_ir.log corresponds to the <solver_name> log for the data amplification ampli at the <iter> iteration
run_io.yaml gives the metadata of the run
run_log.md log of the run

python3.9 scripts/solver_logs_to_tsv.py run/$run_uid

python3.9 scripts/latex_ilp_stats.py run/$run_uid