Benchmark 3 v1: Quast results analysis¶
Agathis_dammara¶
bad result due to wrong oriented contig order
Begonia_pulchrifolia¶
Unfeasible
Carpodetus_serratus¶
Two misassemblies because of local inversion in the single-copy
Commiphora_foliacea¶
Unexpected
5 local misassemblies and 0 global misassembly due to links sequences (c.f. contig Quast evaluation)
98% coverage
Cucumis_hystrix¶
Unexpected
While the order is not retrieved, near-perfect Quast alignment (miss 148bp, 100 % cover).
Note that the missing contig (\(7\)) is 303bp length.
Eucommia_ulmoides¶
Unexpected
5 local misassemblies due to the sequences of the links (c.f. contig Quast evaluation)
Jasminum_tortuosum¶
Inversion of contig \(4\) (2 misassemblies)
Juniperus_scopulorum¶
Unexpected
1 local misassembly due to the sequences of the links (c.f. contig Quast evaluation)
Lamprocapnos_spectabilis¶
Wrong oriented contig order
Lathyrus_pubescens¶
Unexpected
98.50% coverage with 0 misassembly and 2 local misassemblies as contig \(12\) is tiny
Lophocereus_schottii¶
1 misassembly because of the inversion
Musa_ornata¶
Unexpected
2 local misassemblies due to the sequences of the link (c.f. contig Quast evaluation)
Pelargonium_nanum¶
4 misassemblies because of missing contigs
Podocarpus_totara¶
4 misassemblies because of wrong oriented contig order
Sciadopitys_verticillata¶
Unexpected
1 misassembly particularly because of wrong sequence of link \((22_f, 3_f)\)
Taxus_baccata¶
Unexpected
2 local misassemblies due to the sequences of the link (c.f. contig Quast evaluation)
Triosteum_pinnatifidum¶
Unexpected
99.28% coverage and 0 misassembly, 2 local misassemblies
Welwitschia_mirabilis¶
Unexpected
1 local misassembly due to the sequences of the link (c.f. contig Quast evaluation)