Benchmark 3 v1: Quast results analysis#

Agathis_dammara#

  • bad result due to wrong oriented contig order

Begonia_pulchrifolia#

  • Unfeasible

Carpodetus_serratus#

  • Two misassemblies because of local inversion in the single-copy

Commiphora_foliacea#

Unexpected

  • 5 local misassemblies and 0 global misassembly due to links sequences (c.f. contig Quast evaluation)

  • 98% coverage

Cucumis_hystrix#

Unexpected

  • While the order is not retrieved, near-perfect Quast alignment (miss 148bp, 100 % cover).

    • Note that the missing contig (\(7\)) is 303bp length.

Eucommia_ulmoides#

Unexpected

  • 5 local misassemblies due to the sequences of the links (c.f. contig Quast evaluation)

Jasminum_tortuosum#

  • Inversion of contig \(4\) (2 misassemblies)

Juniperus_scopulorum#

Unexpected

  • 1 local misassembly due to the sequences of the links (c.f. contig Quast evaluation)

Lamprocapnos_spectabilis#

  • Wrong oriented contig order

Lathyrus_pubescens#

Unexpected

  • 98.50% coverage with 0 misassembly and 2 local misassemblies as contig \(12\) is tiny

Lophocereus_schottii#

  • 1 misassembly because of the inversion

Musa_ornata#

Unexpected

  • 2 local misassemblies due to the sequences of the link (c.f. contig Quast evaluation)

Pelargonium_nanum#

  • 4 misassemblies because of missing contigs

Podocarpus_totara#

  • 4 misassemblies because of wrong oriented contig order

Sciadopitys_verticillata#

Unexpected

  • 1 misassembly particularly because of wrong sequence of link \((22_f, 3_f)\)

Taxus_baccata#

Unexpected

  • 2 local misassemblies due to the sequences of the link (c.f. contig Quast evaluation)

Triosteum_pinnatifidum#

Unexpected

  • 99.28% coverage and 0 misassembly, 2 local misassemblies

Welwitschia_mirabilis#

Unexpected

  • 1 local misassembly due to the sequences of the link (c.f. contig Quast evaluation)