Benchmark 3 v1: Quast results analysis#
Agathis_dammara#
bad result due to wrong oriented contig order
Begonia_pulchrifolia#
Unfeasible
Carpodetus_serratus#
Two misassemblies because of local inversion in the single-copy
Commiphora_foliacea#
Unexpected
5 local misassemblies and 0 global misassembly due to links sequences (c.f. contig Quast evaluation)
98% coverage
Cucumis_hystrix#
Unexpected
While the order is not retrieved, near-perfect Quast alignment (miss 148bp, 100 % cover).
Note that the missing contig (\(7\)) is 303bp length.
Eucommia_ulmoides#
Unexpected
5 local misassemblies due to the sequences of the links (c.f. contig Quast evaluation)
Jasminum_tortuosum#
Inversion of contig \(4\) (2 misassemblies)
Juniperus_scopulorum#
Unexpected
1 local misassembly due to the sequences of the links (c.f. contig Quast evaluation)
Lamprocapnos_spectabilis#
Wrong oriented contig order
Lathyrus_pubescens#
Unexpected
98.50% coverage with 0 misassembly and 2 local misassemblies as contig \(12\) is tiny
Lophocereus_schottii#
1 misassembly because of the inversion
Musa_ornata#
Unexpected
2 local misassemblies due to the sequences of the link (c.f. contig Quast evaluation)
Pelargonium_nanum#
4 misassemblies because of missing contigs
Podocarpus_totara#
4 misassemblies because of wrong oriented contig order
Sciadopitys_verticillata#
Unexpected
1 misassembly particularly because of wrong sequence of link \((22_f, 3_f)\)
Taxus_baccata#
Unexpected
2 local misassemblies due to the sequences of the link (c.f. contig Quast evaluation)
Triosteum_pinnatifidum#
Unexpected
99.28% coverage and 0 misassembly, 2 local misassemblies
Welwitschia_mirabilis#
Unexpected
1 local misassembly due to the sequences of the link (c.f. contig Quast evaluation)