Benchmark 3 v2: Quast results analysis#
Agathis_dammara#
3 mis and 2 local : due to wrong sequence of some links and misassembled single-copy region
Carpodetus_serratus#
1 local mis in the sequence of a link
Lamprocapnos_spectabilis#
3 local mis in the sequences of the links
Lathyrus_pubescens#
1 local mis in the sequence of a link
Pelargonium_nanum#
Misassembly due to wrong links in SC,
Local mis in a sequence of a link in an IR,
Inversion of a link sequence in IR
Triosteum_pinnatifidum#
One local mis in DR (contig 11)
Quast doesn’t align contig 11 twice. But to respect what Quast aligned, we must pass thought 11 twice (see graph in Gephi).
Second local mis in the sequence of a link between IR and SC