Benchmark 3 v2: Quast results analysis#

Agathis_dammara#

  • 3 mis and 2 local : due to wrong sequence of some links and misassembled single-copy region

Carpodetus_serratus#

  • 1 local mis in the sequence of a link

Lamprocapnos_spectabilis#

  • 3 local mis in the sequences of the links

Lathyrus_pubescens#

  • 1 local mis in the sequence of a link

Pelargonium_nanum#

  • Misassembly due to wrong links in SC,

  • Local mis in a sequence of a link in an IR,

  • Inversion of a link sequence in IR

Triosteum_pinnatifidum#

  • One local mis in DR (contig 11)

    • Quast doesn’t align contig 11 twice. But to respect what Quast aligned, we must pass thought 11 twice (see graph in Gephi).

  • Second local mis in the sequence of a link between IR and SC